RPC Server

(This URL schema is deprecated. See Bioverse API for details)

Remote Procedure Calls can be done directly over the web with a browser, or with an XMLRPC or JSONRPC library in a programming environment (Python, Perl, Java, C/C++, Javascript, etc.)

Available public methods

Group 0

• db_status - Get status of the database

Group 1

• annotation - Retrieve annotations for a molecule
• annotations - Retrieve functional annotations matching a string
• evidence - Retrieve evidence for a function as it is attached to a molecule
• go_description - Map between a go_name or go_id and a full GO description.
• go_path - Return all paths from the root node to a given node in the GO DAG.
• molecule - Retrieve information about a molecule
• molecule_function - Retrieve functions and function evidences for a molecule.
• molecule_interaction - Return interaction information for a molecule
• molecule_name - Retrieve name of a molecule
• molecule_sequence - Get the sequence of a particular molecule
• molecule_sequence_similarity - Retrieve list of molecules similar to the one provided, along with similarity information.
• molecule_structure - Get the secondary structure of particular molecule
• molecules_by_annotation - Retrieve molecules by their functional annotation
• molecules_by_name - Retrieve molecules by their name
• molecules_by_sequence - Retrieve a list of molecules with the given sequence
• organism - Get info about a specific organism
• organisms - Get a list of all organisms
• related - Find functions related to the one specified
• search_function - Find function descriptions that match specified text
• session - Get and set session state

Group 2

• search2_find_molecules - Run an existing search query and return the results
• search2_get_query - Retrieve an existing query
• search2_make_query - Make or modify a query
• search2_status - Return status of a query
• search2_terms_match_policy - Update the match policy of a term in a context

Group 3

• dao_sequence_by_name -
• igr_graph_create_session - None
• igr_graph_delete_session - None
• igr_graph_init_session - None
• igr_graph_nbhd - None
• molecule_structure_pdb - PDB structure information for a molecule